PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0865s0080.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 112aa    MW: 12671.2 Da    PI: 4.6568
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0865s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS56.36.5e-181110270374
                    GRAS 270 sleaklpreseerikvErellgreivnvvacegae...rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve. 352
                             +le+++ ++s+er ++Ere  +r+iv v+ac +++     er+e+  +W+ rl+ea F+pv +s+++++++k+ll+++k  g+ +  
  SapurV1A.0865s0080.1.p   1 MLEESFVPTSNERLMLERE-SSRNIVRVLACDEENgggECERRERGIQWSGRLREA-FSPVGFSDDVVDDVKALLKRYK-SGWALVl 84 
                             57899999***********.9**********9887666799*************98.**********************.5555544 PP

                    GRAS 353 ....eesgslvlgWkdrpLvsvSaWr 374
                                 +++  ++l+Wk++p+v++SaW+
  SapurV1A.0865s0080.1.p  85 aqgdNHESGIYLTWKEEPVVWASAWK 110
                             46645567778**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035142.2E-151110IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MLEESFVPTS NERLMLERES SRNIVRVLAC DEENGGGECE RRERGIQWSG RLREAFSPVG  60
FSDDVVDDVK ALLKRYKSGW ALVLAQGDNH ESGIYLTWKE EPVVWASAWK P*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2176431e-125AC217643.1 Populus trichocarpa clone POP035-K18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006372828.16e-68hypothetical protein POPTR_0017s05450g
RefseqXP_011037138.15e-68PREDICTED: protein SHORT-ROOT-like
SwissprotA2YN561e-30SHR1_ORYSI; Protein SHORT-ROOT 1
SwissprotQ8H2X81e-30SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLU5FI436e-68U5FI43_POPTR; Uncharacterized protein
STRINGPOPTR_0017s05450.12e-67(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.14e-22GRAS family protein